miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002324
species: Raphanus raphanistrum
miRNA family: MIR2936
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGAGAGAGATAACACAGAC

miRNA*
CTGTTCTATCTCTCTCTTCCA

mismatches: 5
bulges: 0

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pre-miRNA
AATCAATCTAGTTTGAGAGAGATAACACAGACGAAACCAAGCTTCTTCCATCTCGTTGCCGCAGATCAAACTTTCCTATTCCTCGGATAAACCTCTCCTT
CTGCGGCGGCGAAACAGAGGAACAAACCTCACTAACAAAAAAAGTTTATACCTTTATATTGTCTGTTCTATCTCTCTCTTCCAAAAATGGC


dot-bracket secondary structure
..............((((((((((..((((((((....(((.((((((....(((((((((((((........(((........)))............)
))))))))))))....)))))).((((................))))....)))....))))))))..))))))))))..(((....))).



SIMILARITIES
miRBase ath-MIR2936: 7e-16

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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